injection column of the metadata file will be converted to lowercase.import_data() function.get_meta_data() to get_metadata().import_data() function.get_meta_data() to get_metadata().Fixed the Valgrind memory issues. This package should now work with valgrind, clang-asan, and gcc-asan.
Updated documentation for filter_cv() to reflect current changes.
Updated vignette to reflect filter_cv() changes.
Added a limit_cores() function to limit cores used when going through CRAN checks.
Major changes to filter_cv(). Old filter_cv() would calculate the coefficient of variance of the biological groups, calculate the average/median, and remove the feature if the average/mean was above the threshold. To account for some groups having high variation by default, the new filter_cv() will now zero out groups if they are above the threshold. If every group in the feature has been zeroed out, we will remove the feature.
filter_cv() has been optimized to use c++ code, so there should be significant speed improvements.
You are also now able to import data.frames for peak table input in import_data().
Initial CRAN submission.
Contains four main filters: filter_mispicked_ions(), filter_group(), filter_cv(), and filter_insource_ions() for the correction of tandem MS/MS peaks.